Run TF Sites on GenePattern

GenePattern provides researchers with a way to run all TF Sites analyses with zero-coding required. GenePattern is completely free, open-source, and provides free compute thanks to a grant from the National Cancer Institute's (NCI) Informatics Technology for Cancer Research (ITCR) program.

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Data Downloads

Transcription Factor Protein Binding Microarray Data
Raw
Normalized
Transcription Factor Position Weight Matrices
JASPAR
Genomes
Fasta
Binary

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TFSites is not intended for use with Protected Health Information (PHI).    Hosted data is released under a Creative Commons v4 license.
Site developed under BSD 3-clause license.    Site version: v1.0.9.1.
We thank all of the scientists who contributed to the datasets from which we draw upon. We thank the Martha Bulyk lab and UniProbe for their work in generating and hosting protein binding microarray data. We thank those who put together the JASPAR and HOCOMOCO databases for organizing and hosting PWM motif data. We thank the Protein Data Base for providing an incredible interface for hosting x-ray crystallography data for TF-DNA structures.
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